bdverse: User Guide
What is the
bdverse
1
Getting started
1.1
Installing the bdverse
1.1.1
Hopefully soon: a stable version from CRAN
1.2
App launcher
1.3
Binder
1.4
Docker
What is Docke?
1.4.1
Docke guide
Play with Docker
bdverse Docker images
1.5
Possible installation problems & solutions
2
bddwc
2.1
bddwc & Darwin Core
What is the Darwin Core standard?
Why it’s important to “Darwinize” a dataset
2.2
Shiny app
2.2.1
Launching the app
2.2.2
App overview
2.2.3
Data upload
2.2.4
From an online database
2.3
Dictionaries
2.3.1
The Darwin Cloud dictionary
2.3.2
Custom dictionary
2.4
Darwinizing your dataset
2.4.1
Darwinizer results
2.4.2
Download your Darwinized data
2.4.3
Closing the app
2.5
Command line operations
2.6
Load package
2.7
Darwinizing a dataset
2.8
Updating
the Darwin Cloud dictionary
2.9
A case study
Case study title
3
bdchecks
3.1
What is bdchecks
3.2
Shiny app
3.2.1
Data upload and download
3.2.2
Choose data checks
3.2.3
Checks results and data filtering
Overwiew
Filtering the data based on the results
3.2.4
Closing the app
3.3
Command line operations
3.4
Load package
3.5
Perform data checks
3.6
Review performed checks
3.6.1
Filtering your data
3.7
Data checks infrastructure
3.7.1
Data checks YAML file
3.7.2
Data check example
3.7.3
Manage your own data checks
4
bdclean
4.1
What is bddwc
4.2
App overview
4.2.1
Data cleaning configuration
4.2.2
Flaging and cleaning
4.3
Perform cleaning
4.3.1
Artifacts and reports
5
Learn more
5.1
Biodiversity data cleaning
6
Getting your feedback
6.1
Report a bug or give feedback within the app
6.2
Submit a GitHub issue
bddwc
bdchecks
bdclean
6.3
Contribute
7
Guide release notes
7.1
0.0.1
8
References
(c) The bdverse team
bdverse: User Guide
Chapter 7
Guide release notes
7.1
0.0.1
YYYY-MM-DD, add details…
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